IL_7ZJW_237

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

G(PSU)U*AAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_237 not in the Motif Atlas

Geometric match to IL_2O3X_001

Geometric discrepancy: 0.2065

The information below is about IL_2O3X_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

7ZJW|1|S2|G|681
7ZJW|1|S2|PSU|682
7ZJW|1|S2|U|683
*
7ZJW|1|S2|A|1024
7ZJW|1|S2|A|1025
7ZJW|1|S2|U|1026

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SW

40S ribosomal protein S11

Chain SY

40S ribosomal protein uS15

Chain Sh

40S ribosomal protein S15a

Chain Si

40S ribosomal protein S23