IL_7ZJW_240

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CC*GGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_240 not in the Motif Atlas

Geometric match to IL_7RQB_024

Geometric discrepancy: 0.3155

The information below is about IL_7RQB_024

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_92001.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

10

Unit IDs

7ZJW|1|S2|C|756
7ZJW|1|S2|C|757
*
7ZJW|1|S2|G|788
7ZJW|1|S2|G|789
7ZJW|1|S2|G|790

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SR

40S ribosomal protein S6