3D structure

PDB id
7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome as it decodes the Sec-UGA codon
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
CGC*GAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ZJW_246 not in the Motif Atlas
Geometric match to IL_4LFB_006
Geometric discrepancy: 0.1265
The information below is about IL_4LFB_006
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

7ZJW|1|S2|C|878
7ZJW|1|S2|G|879
7ZJW|1|S2|C|880
*
7ZJW|1|S2|G|908
7ZJW|1|S2|A|909
7ZJW|1|S2|G|910

Current chains

Chain S2
18S rRNA

Nearby chains

Chain LU
60S ribosomal protein L19
Chain SS
40S ribosomal protein S7

Coloring options:


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