3D structure

PDB id
7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome as it decodes the Sec-UGA codon
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
GCUAG*CUUGGACC
Length
13 nucleotides
Bulged bases
7ZJW|1|S2|G|971
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ZJW_252 not in the Motif Atlas
Geometric match to IL_4V88_434
Geometric discrepancy: 0.0956
The information below is about IL_4V88_434
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_45067.5
Basepair signature
cWW-tSH-tSS-tHS-R-cWW-cWW-R
Number of instances in this motif group
16

Unit IDs

7ZJW|1|S2|G|953
7ZJW|1|S2|C|954
7ZJW|1|S2|U|955
7ZJW|1|S2|A|956
7ZJW|1|S2|G|957
*
7ZJW|1|S2|C|968
7ZJW|1|S2|U|969
7ZJW|1|S2|U|970
7ZJW|1|S2|G|971
7ZJW|1|S2|G|972
7ZJW|1|S2|A|973
7ZJW|1|S2|C|974
7ZJW|1|S2|C|975

Current chains

Chain S2
18S rRNA

Nearby chains

Chain L5
Large subunit ribosomal RNA; LSU rRNA
Chain SM
40S ribosomal protein S3a
Chain SZ
40S ribosomal protein uS11

Coloring options:


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