IL_7ZJW_256
3D structure
- PDB id
- 7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome as it decodes the Sec-UGA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CGAU*GCAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ZJW_256 not in the Motif Atlas
- Geometric match to IL_4V88_438
- Geometric discrepancy: 0.1325
- The information below is about IL_4V88_438
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
7ZJW|1|S2|C|1099
7ZJW|1|S2|G|1100
7ZJW|1|S2|A|1101
7ZJW|1|S2|U|1102
*
7ZJW|1|S2|G|1132
7ZJW|1|S2|C|1133
7ZJW|1|S2|A|1134
7ZJW|1|S2|G|1135
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SB
- 40S ribosomal protein S27
- Chain SF
- Ribosomal protein eS26
- Chain SL
- 40S ribosomal protein SA
- Chain SM
- 40S ribosomal protein S3a
- Chain SY
- 40S ribosomal protein uS15
- Chain Sc
- 40S ribosomal protein eS17
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