IL_7ZJW_271

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

G(OMG)U*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_271 not in the Motif Atlas

Geometric match to IL_4V9F_105

Geometric discrepancy: 0.1318

The information below is about IL_4V9F_105

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

7ZJW|1|S2|G|1328
7ZJW|1|S2|OMG|1329
7ZJW|1|S2|U|1330
*
7ZJW|1|S2|G|1501
7ZJW|1|S2|C|1502
7ZJW|1|S2|C|1503

Current chains

Chain S2

18S rRNA

Nearby chains

Chain F

Selenocysteine transfer RNA

Chain SD

40S ribosomal protein S27a

Chain SO

40S ribosomal protein S3