3D structure

PDB id
7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome as it decodes the Sec-UGA codon
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
GUGCCUACC*GUAACC
Length
15 nucleotides
Bulged bases
7ZJW|1|S2|A|1581, 7ZJW|1|S2|C|1582
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ZJW_284 not in the Motif Atlas
Geometric match to IL_4LFB_052
Geometric discrepancy: 0.203
The information below is about IL_4LFB_052
Detailed Annotation
180 degree turn
Broad Annotation
No text annotation
Motif group
IL_11344.2
Basepair signature
cWW-cSS-L-cWW
Number of instances in this motif group
2

Unit IDs

7ZJW|1|S2|G|1551
7ZJW|1|S2|U|1552
7ZJW|1|S2|G|1553
7ZJW|1|S2|C|1554
7ZJW|1|S2|C|1555
7ZJW|1|S2|U|1556
7ZJW|1|S2|A|1557
7ZJW|1|S2|C|1558
7ZJW|1|S2|C|1559
*
7ZJW|1|S2|G|1578
7ZJW|1|S2|U|1579
7ZJW|1|S2|A|1580
7ZJW|1|S2|A|1581
7ZJW|1|S2|C|1582
7ZJW|1|S2|C|1583

Current chains

Chain S2
18S rRNA

Nearby chains

Chain SH
40S ribosomal protein uS14
Chain SO
40S ribosomal protein S3
Chain SV
40S ribosomal protein eS10
Chain Se
40S Ribosomal protein eS19
Chain Sf
40S ribosomal protein uS10

Coloring options:


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