IL_7ZJW_298

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCC*GCGC

Length

7 nucleotides

Bulged bases

7ZJW|1|S2|C|1784

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_298 not in the Motif Atlas

Geometric match to IL_4LFB_063

Geometric discrepancy: 0.2572

The information below is about IL_4LFB_063

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

7ZJW|1|S2|G|1750
7ZJW|1|S2|C|1751
7ZJW|1|S2|C|1752
*
7ZJW|1|S2|G|1783
7ZJW|1|S2|C|1784
7ZJW|1|S2|G|1785
7ZJW|1|S2|C|1786

Current chains

Chain S2

18S rRNA

Nearby chains