3D structure

PDB id
7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome as it decodes the Sec-UGA codon
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
GGAAGUCGG*CUGU(OMC)
Length
14 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ZJW_322 not in the Motif Atlas
Homologous match to IL_8P9A_305
Geometric discrepancy: 0.0648
The information below is about IL_8P9A_305
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_22854.4
Basepair signature
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
Number of instances in this motif group
7

Unit IDs

7ZJW|1|L5|G|2690
7ZJW|1|L5|G|2691
7ZJW|1|L5|A|2692
7ZJW|1|L5|A|2693
7ZJW|1|L5|G|2694
7ZJW|1|L5|U|2695
7ZJW|1|L5|C|2696
7ZJW|1|L5|G|2697
7ZJW|1|L5|G|2698
*
7ZJW|1|L5|C|3569
7ZJW|1|L5|U|3570
7ZJW|1|L5|G|3571
7ZJW|1|L5|U|3572
7ZJW|1|L5|OMC|3573

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LE
60S ribosomal protein L3
Chain LY
60S ribosomal protein L23

Coloring options:


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