IL_7ZJW_324
3D structure
- PDB id
- 7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome as it decodes the Sec-UGA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- C(5MC)AA(A2M)UGCCUC(OMG)*(OMC)GCG
- Length
- 16 nucleotides
- Bulged bases
- 7ZJW|1|L5|A2M|3517, 7ZJW|1|L5|C|3523, 7ZJW|1|L5|C|3542
- QA status
- Modified nucleotides: 5MC, A2M, OMG, OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ZJW_324 not in the Motif Atlas
- Homologous match to IL_8C3A_095
- Geometric discrepancy: 0.0866
- The information below is about IL_8C3A_095
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_66080.1
- Basepair signature
- cWW-cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
7ZJW|1|L5|C|3513
7ZJW|1|L5|5MC|3514
7ZJW|1|L5|A|3515
7ZJW|1|L5|A|3516
7ZJW|1|L5|A2M|3517
7ZJW|1|L5|U|3518
7ZJW|1|L5|G|3519
7ZJW|1|L5|C|3520
7ZJW|1|L5|C|3521
7ZJW|1|L5|U|3522
7ZJW|1|L5|C|3523
7ZJW|1|L5|OMG|3524
*
7ZJW|1|L5|OMC|3540
7ZJW|1|L5|G|3541
7ZJW|1|L5|C|3542
7ZJW|1|L5|G|3543
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain Sl
- 60S ribosomal protein L41
Coloring options: