IL_7ZJW_324

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

C(5MC)AA(A2M)UGCCUC(OMG)*(OMC)GCG

Length

16 nucleotides

Bulged bases

7ZJW|1|L5|A2M|3517, 7ZJW|1|L5|C|3523, 7ZJW|1|L5|C|3542

QA status

Modified nucleotides: 5MC, A2M, OMG, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_324 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.0866

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

7ZJW|1|L5|C|3513
7ZJW|1|L5|5MC|3514
7ZJW|1|L5|A|3515
7ZJW|1|L5|A|3516
7ZJW|1|L5|A2M|3517
7ZJW|1|L5|U|3518
7ZJW|1|L5|G|3519
7ZJW|1|L5|C|3520
7ZJW|1|L5|C|3521
7ZJW|1|L5|U|3522
7ZJW|1|L5|C|3523
7ZJW|1|L5|OMG|3524
*
7ZJW|1|L5|OMC|3540
7ZJW|1|L5|G|3541
7ZJW|1|L5|C|3542
7ZJW|1|L5|G|3543

Current chains

Chain L5

28S rRNA

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain Sl

60S ribosomal protein L41