IL_7ZJW_328
3D structure
- PDB id
- 7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome as it decodes the Sec-UGA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- U(PSU)GA*(PSU)ACA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ZJW_328 not in the Motif Atlas
- Homologous match to IL_8C3A_109
- Geometric discrepancy: 0.3658
- The information below is about IL_8C3A_109
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
7ZJW|1|L5|U|4041
7ZJW|1|L5|PSU|4042
7ZJW|1|L5|G|4043
7ZJW|1|L5|A|4044
*
7ZJW|1|L5|PSU|4058
7ZJW|1|L5|A|4059
7ZJW|1|L5|C|4060
7ZJW|1|L5|A|4061
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LG
- Ribosomal_L18_c domain-containing protein
- Chain LT
- 60S ribosomal Protein eL18
- Chain LW
- 60S ribosomal protein eL21
- Chain Le
- 60S ribosomal protein L29
- Chain Lq
- 60S ribosomal protein eL42
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