IL_7ZJW_331

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

(OMC)(PSU)C*G(PSU)G(A2M)G

Length

8 nucleotides

Bulged bases

7ZJW|1|L5|G|4268, 7ZJW|1|L5|A2M|4269

QA status

Modified nucleotides: OMC, PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_331 not in the Motif Atlas

Homologous match to IL_8C3A_116

Geometric discrepancy: 0.3395

The information below is about IL_8C3A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

7ZJW|1|L5|OMC|4202
7ZJW|1|L5|PSU|4203
7ZJW|1|L5|C|4204
*
7ZJW|1|L5|G|4266
7ZJW|1|L5|PSU|4267
7ZJW|1|L5|G|4268
7ZJW|1|L5|A2M|4269
7ZJW|1|L5|G|4270

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L3

Chain LY

60S ribosomal protein L23