3D structure

PDB id
7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome as it decodes the Sec-UGA codon
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
CAUUG*CCAAGCG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7ZJW|1|L5|C|4212
7ZJW|1|L5|A|4213
7ZJW|1|L5|U|4214
7ZJW|1|L5|U|4215
7ZJW|1|L5|G|4216
*
7ZJW|1|L5|C|4231
7ZJW|1|L5|C|4232
7ZJW|1|L5|A|4233
7ZJW|1|L5|A|4234
7ZJW|1|L5|G|4235
7ZJW|1|L5|C|4236
7ZJW|1|L5|G|4237

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LE
60S ribosomal protein L3
Chain LK
60S ribosomal protein L9
Chain LR
60S ribosomal protein uL13
Chain LY
60S ribosomal protein L23
Chain Lp
60S ribosomal protein L40

Coloring options:

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