IL_7ZJW_336

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

(PSU)UCG*CCUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_336 not in the Motif Atlas

Geometric match to IL_3TZR_003

Geometric discrepancy: 0.3062

The information below is about IL_3TZR_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

7ZJW|1|L5|PSU|4711
7ZJW|1|L5|U|4712
7ZJW|1|L5|C|4713
7ZJW|1|L5|G|4714
*
7ZJW|1|L5|C|4722
7ZJW|1|L5|C|4723
7ZJW|1|L5|U|4724
7ZJW|1|L5|G|4725

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L3

Chain LS

60S ribosomal protein uL22

Chain Lg

60S ribosomal protein eL31