IL_7ZJW_338

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCA*(PSU)A(PSU)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_338 not in the Motif Atlas

Geometric match to IL_4M4O_001

Geometric discrepancy: 0.3944

The information below is about IL_4M4O_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

7ZJW|1|S2|G|23
7ZJW|1|S2|C|24
7ZJW|1|S2|A|25
*
7ZJW|1|S2|PSU|650
7ZJW|1|S2|A|651
7ZJW|1|S2|PSU|652

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SU

40S ribosomal protein S9

Chain Si

40S ribosomal protein S23