IL_7ZJW_340
3D structure
- PDB id
- 7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome as it decodes the Sec-UGA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UAUGGU*AACG
- Length
- 10 nucleotides
- Bulged bases
- 7ZJW|1|S2|G|113, 7ZJW|1|S2|G|114
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ZJW_340 not in the Motif Atlas
- Homologous match to IL_8P9A_380
- Geometric discrepancy: 0.4836
- The information below is about IL_8P9A_380
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_77658.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 34
Unit IDs
7ZJW|1|S2|U|110
7ZJW|1|S2|A|111
7ZJW|1|S2|U|112
7ZJW|1|S2|G|113
7ZJW|1|S2|G|114
7ZJW|1|S2|U|115
*
7ZJW|1|S2|A|349
7ZJW|1|S2|A|350
7ZJW|1|S2|C|351
7ZJW|1|S2|G|352
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SP
- 40S ribosomal protein eS4
- Chain ST
- 40S ribosomal protein S8
- Chain SW
- 40S ribosomal protein S11
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