IL_7ZJW_342
3D structure
- PDB id
- 7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome as it decodes the Sec-UGA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GGAUAAC*GCUAA(OMU)A(OMC)
- Length
- 15 nucleotides
- Bulged bases
- 7ZJW|1|S2|OMU|172
- QA status
- Modified nucleotides: OMU, OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ZJW_342 not in the Motif Atlas
- Homologous match to IL_8C3A_402
- Geometric discrepancy: 0.1254
- The information below is about IL_8C3A_402
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.4
- Basepair signature
- cWW-L-R-tWH-tWH-tHW-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
7ZJW|1|S2|G|145
7ZJW|1|S2|G|146
7ZJW|1|S2|A|147
7ZJW|1|S2|U|148
7ZJW|1|S2|A|149
7ZJW|1|S2|A|150
7ZJW|1|S2|C|151
*
7ZJW|1|S2|G|167
7ZJW|1|S2|C|168
7ZJW|1|S2|U|169
7ZJW|1|S2|A|170
7ZJW|1|S2|A|171
7ZJW|1|S2|OMU|172
7ZJW|1|S2|A|173
7ZJW|1|S2|OMC|174
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SR
- 40S ribosomal protein S6
- Chain Sj
- 40S ribosomal protein S24
Coloring options: