IL_7ZJW_350

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AC*GAA(PSU)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_350 not in the Motif Atlas

Homologous match to IL_8P9A_412

Geometric discrepancy: 0.326

The information below is about IL_8P9A_412

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68140.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

18

Unit IDs

7ZJW|1|S2|A|803
7ZJW|1|S2|C|804
*
7ZJW|1|S2|G|861
7ZJW|1|S2|A|862
7ZJW|1|S2|A|863
7ZJW|1|S2|PSU|864

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SS

40S ribosomal protein S7

Chain SW

40S ribosomal protein S11

Chain Sh

40S ribosomal protein S15a

Chain Si

40S ribosomal protein S23