IL_7ZJW_355

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

G(OMU)G*CC

Length

5 nucleotides

Bulged bases

7ZJW|1|S2|OMU|1327

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_355 not in the Motif Atlas

Homologous match to IL_8C3A_455

Geometric discrepancy: 0.1133

The information below is about IL_8C3A_455

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

94

Unit IDs

7ZJW|1|S2|G|1326
7ZJW|1|S2|OMU|1327
7ZJW|1|S2|G|1328
*
7ZJW|1|S2|C|1503
7ZJW|1|S2|C|1504

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SD

40S ribosomal protein S27a

Chain SH

40S ribosomal protein uS14

Chain SV

40S ribosomal protein eS10