IL_7ZJW_358

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

(PSU)GG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_358 not in the Motif Atlas

Homologous match to IL_8P9A_442

Geometric discrepancy: 0.2664

The information below is about IL_8P9A_442

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

7ZJW|1|S2|PSU|1348
7ZJW|1|S2|G|1349
7ZJW|1|S2|G|1350
*
7ZJW|1|S2|C|1381
7ZJW|1|S2|G|1382
7ZJW|1|S2|A|1383

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SL

40S ribosomal protein SA

Chain SN

40S ribosomal protein uS5

Chain SO

40S ribosomal protein S3

Chain Sc

40S ribosomal protein eS17