IL_7ZJW_361

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCC*GGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_361 not in the Motif Atlas

Geometric match to IL_4P3T_002

Geometric discrepancy: 0.2331

The information below is about IL_4P3T_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01472.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

7ZJW|1|S2|C|1752
7ZJW|1|S2|C|1753
7ZJW|1|S2|C|1754
*
7ZJW|1|S2|G|1780
7ZJW|1|S2|G|1781
7ZJW|1|S2|A|1782
7ZJW|1|S2|G|1783

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SR

40S ribosomal protein S6