IL_7ZJX_040

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

7ZJX|1|L5|G|743, 7ZJX|1|L5|C|813

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_040 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.1574

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7ZJX|1|L5|G|740
7ZJX|1|L5|A|741
7ZJX|1|L5|A|742
7ZJX|1|L5|G|743
7ZJX|1|L5|G|744
7ZJX|1|L5|U|745
7ZJX|1|L5|G|746
7ZJX|1|L5|G|747
*
7ZJX|1|L5|U|808
7ZJX|1|L5|G|809
7ZJX|1|L5|U|810
7ZJX|1|L5|U|811
7ZJX|1|L5|A|812
7ZJX|1|L5|C|813
7ZJX|1|L5|A|814
7ZJX|1|L5|G|815
7ZJX|1|L5|C|816

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LP

60S ribosomal protein L14

Chain LV

60S ribosomal protein eL20