3D structure

PDB id
7ZJX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome programmed with SECIS and SBP2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CUCAUCAG*CUGGAG
Length
14 nucleotides
Bulged bases
7ZJX|1|L5|U|1869, 7ZJX|1|L5|C|1870, 7ZJX|1|L5|G|1994, 7ZJX|1|L5|A|1996
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ZJX_074 not in the Motif Atlas
Geometric match to IL_5TBW_051
Geometric discrepancy: 0.2495
The information below is about IL_5TBW_051
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_27086.1
Basepair signature
cWW-tWW-L-tWW-cWW-L
Number of instances in this motif group
2

Unit IDs

7ZJX|1|L5|C|1865
7ZJX|1|L5|U|1866
7ZJX|1|L5|C|1867
7ZJX|1|L5|A|1868
7ZJX|1|L5|U|1869
7ZJX|1|L5|C|1870
7ZJX|1|L5|A|1871
7ZJX|1|L5|G|1872
*
7ZJX|1|L5|C|1992
7ZJX|1|L5|U|1993
7ZJX|1|L5|G|1994
7ZJX|1|L5|G|1995
7ZJX|1|L5|A|1996
7ZJX|1|L5|G|1997

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LK
60S ribosomal protein L9
Chain LP
60S ribosomal protein L14
Chain LR
60S ribosomal protein uL13
Chain LV
60S ribosomal protein eL20
Chain Lp
60S ribosomal protein L40

Coloring options:


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