IL_7ZJX_077

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

7ZJX|1|L5|A|1899

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_077 not in the Motif Atlas

Homologous match to IL_8C3A_057

Geometric discrepancy: 0.2977

The information below is about IL_8C3A_057

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

7ZJX|1|L5|U|1896
7ZJX|1|L5|A|1897
7ZJX|1|L5|U|1898
7ZJX|1|L5|A|1899
7ZJX|1|L5|G|1900
7ZJX|1|L5|A|1901
7ZJX|1|L5|C|1902
7ZJX|1|L5|A|1903
7ZJX|1|L5|G|1904
*
7ZJX|1|L5|C|1961
7ZJX|1|L5|C|1962
7ZJX|1|L5|G|1963
7ZJX|1|L5|A|1964
7ZJX|1|L5|A|1965

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LV

60S ribosomal protein eL20

Chain Lp

60S ribosomal protein L40