3D structure

PDB id
7ZJX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome programmed with SECIS and SBP2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CGAAGG*UGUUGACG
Length
14 nucleotides
Bulged bases
7ZJX|1|L5|A|3395, 7ZJX|1|L5|U|3411, 7ZJX|1|L5|C|3415
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ZJX_107 not in the Motif Atlas
Homologous match to IL_8C3A_088
Geometric discrepancy: 0.0957
The information below is about IL_8C3A_088
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_64509.1
Basepair signature
cWW-tWW-tWW-tSS-L-cWW
Number of instances in this motif group
2

Unit IDs

7ZJX|1|L5|C|3392
7ZJX|1|L5|G|3393
7ZJX|1|L5|A|3394
7ZJX|1|L5|A|3395
7ZJX|1|L5|G|3396
7ZJX|1|L5|G|3397
*
7ZJX|1|L5|U|3409
7ZJX|1|L5|G|3410
7ZJX|1|L5|U|3411
7ZJX|1|L5|U|3412
7ZJX|1|L5|G|3413
7ZJX|1|L5|A|3414
7ZJX|1|L5|C|3415
7ZJX|1|L5|G|3416

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LD
60S ribosomal protein uL2
Chain Lr
60S ribosomal protein eL43
Chain S2
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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