IL_7ZJX_107
3D structure
- PDB id
- 7ZJX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome programmed with SECIS and SBP2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAAGG*UGUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 7ZJX|1|L5|A|3395, 7ZJX|1|L5|U|3411, 7ZJX|1|L5|C|3415
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ZJX_107 not in the Motif Atlas
- Homologous match to IL_8C3A_088
- Geometric discrepancy: 0.0957
- The information below is about IL_8C3A_088
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_64509.1
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
7ZJX|1|L5|C|3392
7ZJX|1|L5|G|3393
7ZJX|1|L5|A|3394
7ZJX|1|L5|A|3395
7ZJX|1|L5|G|3396
7ZJX|1|L5|G|3397
*
7ZJX|1|L5|U|3409
7ZJX|1|L5|G|3410
7ZJX|1|L5|U|3411
7ZJX|1|L5|U|3412
7ZJX|1|L5|G|3413
7ZJX|1|L5|A|3414
7ZJX|1|L5|C|3415
7ZJX|1|L5|G|3416
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LD
- 60S ribosomal protein uL2
- Chain Lr
- 60S ribosomal protein eL43
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
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