IL_7ZJX_130

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_130 not in the Motif Atlas

Geometric match to IL_1MZP_003

Geometric discrepancy: 0.3295

The information below is about IL_1MZP_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

7ZJX|1|L5|G|3702
7ZJX|1|L5|G|3703
7ZJX|1|L5|A|3704
7ZJX|1|L5|G|3705
*
7ZJX|1|L5|C|3766
7ZJX|1|L5|G|3767
7ZJX|1|L5|C|3768
7ZJX|1|L5|C|3769
7ZJX|1|L5|G|3770
7ZJX|1|L5|G|3771
7ZJX|1|L5|U|3772
7ZJX|1|L5|G|3773
7ZJX|1|L5|A|3774
7ZJX|1|L5|A|3775
7ZJX|1|L5|A|3776
7ZJX|1|L5|U|3777
7ZJX|1|L5|A|3778
7ZJX|1|L5|C|3779

Current chains

Chain L5

28S rRNA

Nearby chains

Chain I

Cripavirus internal ribosome entry site (IRES); CrPV IRES

Chain Lx

Ribosomal protein