IL_7ZJX_168

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCCCG*CGUCA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_168 not in the Motif Atlas

Geometric match to IL_5BTM_001

Geometric discrepancy: 0.3075

The information below is about IL_5BTM_001

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

7ZJX|1|L5|U|4624
7ZJX|1|L5|C|4625
7ZJX|1|L5|C|4626
7ZJX|1|L5|C|4627
7ZJX|1|L5|G|4628
*
7ZJX|1|L5|C|4669
7ZJX|1|L5|G|4670
7ZJX|1|L5|U|4671
7ZJX|1|L5|C|4672
7ZJX|1|L5|A|4673

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

60S ribosomal protein L6

Chain LP

60S ribosomal protein L14

Chain LR

60S ribosomal protein uL13