IL_7ZJX_233
3D structure
- PDB id
- 7ZJX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome programmed with SECIS and SBP2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUAU*AGAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ZJX_233 not in the Motif Atlas
- Geometric match to IL_4V88_432
- Geometric discrepancy: 0.0979
- The information below is about IL_4V88_432
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
7ZJX|1|S2|G|943
7ZJX|1|S2|U|944
7ZJX|1|S2|A|945
7ZJX|1|S2|U|946
*
7ZJX|1|S2|A|982
7ZJX|1|S2|G|983
7ZJX|1|S2|A|984
7ZJX|1|S2|C|985
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain LD
- 60S ribosomal protein uL2
- Chain SF
- 40S ribosomal protein eS26
- Chain SM
- 40S ribosomal protein S3a
- Chain SZ
- 40S ribosomal protein uS11
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