IL_7ZJX_299

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

(OMU)GAAC*GAA

Length

8 nucleotides

Bulged bases

7ZJX|1|L5|A|2260, 7ZJX|1|L5|A|2271

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_299 not in the Motif Atlas

Homologous match to IL_8C3A_482

Geometric discrepancy: 0.4258

The information below is about IL_8C3A_482

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_04395.1

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

3

Unit IDs

7ZJX|1|L5|OMU|2258
7ZJX|1|L5|G|2259
7ZJX|1|L5|A|2260
7ZJX|1|L5|A|2261
7ZJX|1|L5|C|2262
*
7ZJX|1|L5|G|2270
7ZJX|1|L5|A|2271
7ZJX|1|L5|A|2272

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LS

60S ribosomal protein uL22

Chain LU

60S ribosomal protein L19

Chain Lo

60S ribosomal protein eL39