IL_7ZJX_300

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AACAA(OMU)G*C(PSU)A(PSU)

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_300 not in the Motif Atlas

Homologous match to IL_8C3A_080

Geometric discrepancy: 0.288

The information below is about IL_8C3A_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49460.3

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

7ZJX|1|L5|A|2675
7ZJX|1|L5|A|2676
7ZJX|1|L5|C|2677
7ZJX|1|L5|A|2678
7ZJX|1|L5|A|2679
7ZJX|1|L5|OMU|2680
7ZJX|1|L5|G|2681
*
7ZJX|1|L5|C|3582
7ZJX|1|L5|PSU|3583
7ZJX|1|L5|A|3584
7ZJX|1|L5|PSU|3585

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein uL3

Chain LS

60S ribosomal protein uL22

Chain Lg

60S ribosomal protein L31