IL_7ZOD_073

3D structure

PDB id

7ZOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

7ZOD|1|b|A|1801, 7ZOD|1|b|C|1816, 7ZOD|1|b|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZOD_073 not in the Motif Atlas

Geometric match to IL_5J7L_313

Geometric discrepancy: 0.0631

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7ZOD|1|b|U|1798
7ZOD|1|b|G|1799
7ZOD|1|b|C|1800
7ZOD|1|b|A|1801
7ZOD|1|b|A|1802
7ZOD|1|b|A|1803
7ZOD|1|b|C|1804
*
7ZOD|1|b|G|1813
7ZOD|1|b|G|1814
7ZOD|1|b|A|1815
7ZOD|1|b|C|1816
7ZOD|1|b|G|1817
7ZOD|1|b|U|1818
7ZOD|1|b|A|1819
7ZOD|1|b|U|1820
7ZOD|1|b|A|1821

Current chains

Chain b

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2