IL_7ZP8_011

3D structure

PDB id

7ZP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZP8_011 not in the Motif Atlas

Geometric match to IL_5J7L_251

Geometric discrepancy: 0.1099

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7ZP8|1|b|C|239
7ZP8|1|b|C|240
7ZP8|1|b|A|241
7ZP8|1|b|G|242
7ZP8|1|b|U|243
7ZP8|1|b|A|244
7ZP8|1|b|G|245
*
7ZP8|1|b|C|253
7ZP8|1|b|G|254
7ZP8|1|b|A|255
7ZP8|1|b|A|256
7ZP8|1|b|C|257
7ZP8|1|b|G|258

Current chains

Chain b

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L35

Chain l

50S ribosomal protein L15