IL_7ZP8_098

3D structure

PDB id

7ZP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZP8_098 not in the Motif Atlas

Geometric match to IL_7RQB_103

Geometric discrepancy: 0.1611

The information below is about IL_7RQB_103

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7ZP8|1|b|C|2652
7ZP8|1|b|U|2653
7ZP8|1|b|A|2654
7ZP8|1|b|G|2655
7ZP8|1|b|U|2656
7ZP8|1|b|A|2657
7ZP8|1|b|C|2658
*
7ZP8|1|b|G|2663
7ZP8|1|b|G|2664
7ZP8|1|b|A|2665
7ZP8|1|b|C|2666
7ZP8|1|b|C|2667
7ZP8|1|b|G|2668

Current chains

Chain b

23S rRNA

Nearby chains

Chain g

50S ribosomal protein L6