IL_7ZP8_110

3D structure

PDB id

7ZP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZP8_110 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.163

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7ZP8|1|b|U|1851
7ZP8|1|b|U|1852
7ZP8|1|b|A|1853
7ZP8|1|b|A|1854
7ZP8|1|b|U|1855
7ZP8|1|b|U|1856
7ZP8|1|b|G|1857
7ZP8|1|b|A|1858
7ZP8|1|b|U|1859
7ZP8|1|b|G|1860
*
7ZP8|1|b|U|1882
7ZP8|1|b|U|1883
7ZP8|1|b|G|1884
7ZP8|1|b|A|1885
7ZP8|1|b|U|1886
7ZP8|1|b|C|1887
7ZP8|1|b|G|1888
7ZP8|1|b|A|1889
7ZP8|1|b|A|1890
7ZP8|1|b|G|1891

Current chains

Chain b

23S rRNA

Nearby chains