IL_7ZPI_001

3D structure

PDB id

7ZPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian Dicer in the "dicing state" with pre-miR-15a substrate

Experimental method

ELECTRON MICROSCOPY

Resolution

5.91 Å

Loop

Sequence

AUAA*UACU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZPI_001 not in the Motif Atlas

Geometric match to IL_402D_001

Geometric discrepancy: 0.2808

The information below is about IL_402D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

7ZPI|1|B|A|10
7ZPI|1|B|U|11
7ZPI|1|B|A|12
7ZPI|1|B|A|13
*
7ZPI|1|B|U|45
7ZPI|1|B|A|46
7ZPI|1|B|C|47
7ZPI|1|B|U|48

Current chains

Chain B

59-nt precursor of miR-15a

Nearby chains

Chain A

Endoribonuclease Dicer