IL_7ZPQ_021

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

7ZPQ|1|2|U|380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZPQ_021 not in the Motif Atlas

Homologous match to IL_4V88_404

Geometric discrepancy: 0.0815

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

7ZPQ|1|2|G|363
7ZPQ|1|2|G|364
7ZPQ|1|2|G|365
*
7ZPQ|1|2|C|376
7ZPQ|1|2|G|377
7ZPQ|1|2|A|378
7ZPQ|1|2|U|379
7ZPQ|1|2|U|380
7ZPQ|1|2|C|381

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AE

40S ribosomal protein S4-A

Chain AJ

40S ribosomal protein S9-A

Chain AX

40S ribosomal protein S23-A