IL_7ZPQ_031

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZPQ_031 not in the Motif Atlas

Homologous match to IL_4V88_413

Geometric discrepancy: 0.2299

The information below is about IL_4V88_413

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

10

Unit IDs

7ZPQ|1|2|A|550
7ZPQ|1|2|G|551
7ZPQ|1|2|G|552
7ZPQ|1|2|G|553
7ZPQ|1|2|C|554
7ZPQ|1|2|A|555
7ZPQ|1|2|A|556
7ZPQ|1|2|G|557
*
7ZPQ|1|2|C|587
7ZPQ|1|2|U|588

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AC

RPS2 isoform 1

Chain AJ

40S ribosomal protein S9-A

Chain Ae

40S ribosomal protein S30-A