IL_7ZPQ_039
3D structure
- PDB id
- 7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- AC*GAAU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ZPQ_039 not in the Motif Atlas
- Homologous match to IL_4V88_423
- Geometric discrepancy: 0.1998
- The information below is about IL_4V88_423
- Detailed Annotation
- Major groove minor groove platform; mini C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_68140.1
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 19
Unit IDs
7ZPQ|1|2|A|746
7ZPQ|1|2|C|747
*
7ZPQ|1|2|G|802
7ZPQ|1|2|A|803
7ZPQ|1|2|A|804
7ZPQ|1|2|U|805
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain AH
- 40S ribosomal protein S7-A
- Chain AL
- 40S ribosomal protein S11-A
- Chain AW
- RPS22A isoform 1
- Chain AX
- 40S ribosomal protein S23-A
Coloring options: