IL_7ZPQ_043

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZPQ_043 not in the Motif Atlas

Geometric match to IL_6N5P_003

Geometric discrepancy: 0.1295

The information below is about IL_6N5P_003

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.1

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

32

Unit IDs

7ZPQ|1|2|A|865
7ZPQ|1|2|G|866
*
7ZPQ|1|2|C|962
7ZPQ|1|2|A|963
7ZPQ|1|2|U|964
7ZPQ|1|2|U|965

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AN

40S ribosomal protein S13

Chain AW

RPS22A isoform 1

Chain Ab

40S ribosomal protein S27-A