IL_7ZPQ_049

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

GUCAG*CUUGGAUU

Length

13 nucleotides

Bulged bases

7ZPQ|1|2|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZPQ_049 not in the Motif Atlas

Homologous match to IL_4V88_434

Geometric discrepancy: 0.1427

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

7ZPQ|1|2|G|895
7ZPQ|1|2|U|896
7ZPQ|1|2|C|897
7ZPQ|1|2|A|898
7ZPQ|1|2|G|899
*
7ZPQ|1|2|C|910
7ZPQ|1|2|U|911
7ZPQ|1|2|U|912
7ZPQ|1|2|G|913
7ZPQ|1|2|G|914
7ZPQ|1|2|A|915
7ZPQ|1|2|U|916
7ZPQ|1|2|U|917

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain AB

40S ribosomal protein S1

Chain AO

40S ribosomal protein S14-B