IL_7ZPQ_055

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZPQ_055 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.0883

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

7ZPQ|1|2|G|1111
7ZPQ|1|2|G|1112
7ZPQ|1|2|A|1113
7ZPQ|1|2|G|1114
7ZPQ|1|2|U|1115
7ZPQ|1|2|A|1116
7ZPQ|1|2|U|1117
7ZPQ|1|2|G|1118
*
7ZPQ|1|2|U|1129
7ZPQ|1|2|G|1130
7ZPQ|1|2|A|1131
7ZPQ|1|2|A|1132
7ZPQ|1|2|A|1133
7ZPQ|1|2|C|1134

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain AX

40S ribosomal protein S23-A

Chain Bm

RPL41A isoform 1