IL_7ZPQ_070

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZPQ_070 not in the Motif Atlas

Homologous match to IL_8C3A_460

Geometric discrepancy: 0.2492

The information below is about IL_8C3A_460

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58310.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

7ZPQ|1|2|C|1306
7ZPQ|1|2|U|1307
7ZPQ|1|2|G|1308
*
7ZPQ|1|2|C|1317
7ZPQ|1|2|G|1318

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AR

40S ribosomal protein S17-B

Chain Aa

RPS26B isoform 1