IL_7ZPQ_072
3D structure
- PDB id
- 7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- AAUA*UUCU
- Length
- 8 nucleotides
- Bulged bases
- 7ZPQ|1|2|A|1346, 7ZPQ|1|2|U|1347
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ZPQ_072 not in the Motif Atlas
- Homologous match to IL_4V88_456
- Geometric discrepancy: 0.1875
- The information below is about IL_4V88_456
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_76458.1
- Basepair signature
- cWW-cSH-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
7ZPQ|1|2|A|1345
7ZPQ|1|2|A|1346
7ZPQ|1|2|U|1347
7ZPQ|1|2|A|1348
*
7ZPQ|1|2|U|1377
7ZPQ|1|2|U|1378
7ZPQ|1|2|C|1379
7ZPQ|1|2|U|1380
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain AQ
- 40S ribosomal protein S16-A
- Chain AU
- RPS20 isoform 1
Coloring options: