IL_7ZPQ_075
3D structure
- PDB id
- 7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- GCCAGCGA*UUGUGAAAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ZPQ_075 not in the Motif Atlas
- Homologous match to IL_4V88_459
- Geometric discrepancy: 0.0959
- The information below is about IL_4V88_459
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_10447.1
- Basepair signature
- cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
7ZPQ|1|2|G|1480
7ZPQ|1|2|C|1481
7ZPQ|1|2|C|1482
7ZPQ|1|2|A|1483
7ZPQ|1|2|G|1484
7ZPQ|1|2|C|1485
7ZPQ|1|2|G|1486
7ZPQ|1|2|A|1487
*
7ZPQ|1|2|U|1519
7ZPQ|1|2|U|1520
7ZPQ|1|2|G|1521
7ZPQ|1|2|U|1522
7ZPQ|1|2|G|1523
7ZPQ|1|2|A|1524
7ZPQ|1|2|A|1525
7ZPQ|1|2|A|1526
7ZPQ|1|2|C|1527
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain AD
- RPS3 isoform 1
- Chain AF
- Rps5p
- Chain AQ
- 40S ribosomal protein S16-A
- Chain AT
- 40S ribosomal protein S19-A
- Chain AU
- RPS20 isoform 1
- Chain Ad
- RPS29A isoform 1
Coloring options: