IL_7ZPQ_079

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

7ZPQ|1|2|C|1637, 7ZPQ|1|2|A|1766

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZPQ_079 not in the Motif Atlas

Homologous match to IL_4V88_463

Geometric discrepancy: 0.1172

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

7ZPQ|1|2|C|1636
7ZPQ|1|2|C|1637
7ZPQ|1|2|G|1638
*
7ZPQ|1|2|C|1764
7ZPQ|1|2|A|1765
7ZPQ|1|2|A|1766
7ZPQ|1|2|G|1767

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 6

Transfer RNA; tRNA

Chain Aa

RPS26B isoform 1