IL_7ZPQ_082
3D structure
- PDB id
- 7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- 7ZPQ|1|2|A|1756
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ZPQ_082 not in the Motif Atlas
- Geometric match to IL_1DUQ_001
- Geometric discrepancy: 0.2671
- The information below is about IL_1DUQ_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_25872.4
- Basepair signature
- cWW-cWW-cWH-cWW
- Number of instances in this motif group
- 5
Unit IDs
7ZPQ|1|2|C|1644
7ZPQ|1|2|G|1645
7ZPQ|1|2|C|1646
7ZPQ|1|2|U|1647
*
7ZPQ|1|2|A|1753
7ZPQ|1|2|A|1754
7ZPQ|1|2|A|1755
7ZPQ|1|2|A|1756
7ZPQ|1|2|G|1757
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain AX
- 40S ribosomal protein S23-A
- Chain Ae
- 40S ribosomal protein S30-A
- Chain Bm
- RPL41A isoform 1
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