IL_7ZPQ_124

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

GGGG*UGCAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZPQ_124 not in the Motif Atlas

Homologous match to IL_8C3A_025

Geometric discrepancy: 0.0641

The information below is about IL_8C3A_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07235.3

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

7ZPQ|1|5|G|725
7ZPQ|1|5|G|726
7ZPQ|1|5|G|727
7ZPQ|1|5|G|728
*
7ZPQ|1|5|U|741
7ZPQ|1|5|G|742
7ZPQ|1|5|C|743
7ZPQ|1|5|A|744
7ZPQ|1|5|C|745

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain BP

60S ribosomal protein L18-A

Chain Ba

60S ribosomal protein L29