IL_7ZPQ_140

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

AA*UUU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZPQ_140 not in the Motif Atlas

Geometric match to IL_6DLR_003

Geometric discrepancy: 0.1189

The information below is about IL_6DLR_003

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

7ZPQ|1|5|A|997
7ZPQ|1|5|A|998
*
7ZPQ|1|5|U|1050
7ZPQ|1|5|U|1051
7ZPQ|1|5|U|1052

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain 4

5S ribosomal RNA; 5S rRNA

Chain BD

RPL5 isoform 1

Chain BI

RPL10 isoform 1

Chain BS

60S ribosomal protein L21-A