IL_7ZPQ_153
3D structure
- PDB id
- 7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- GACACCACAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 7ZPQ|1|5|C|1196, 7ZPQ|1|5|A|1302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ZPQ_153 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.0598
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
7ZPQ|1|5|G|1194
7ZPQ|1|5|A|1195
7ZPQ|1|5|C|1196
7ZPQ|1|5|A|1197
7ZPQ|1|5|C|1198
7ZPQ|1|5|C|1199
7ZPQ|1|5|A|1200
7ZPQ|1|5|C|1201
7ZPQ|1|5|A|1202
7ZPQ|1|5|A|1203
7ZPQ|1|5|A|1204
7ZPQ|1|5|A|1205
*
7ZPQ|1|5|U|1299
7ZPQ|1|5|G|1300
7ZPQ|1|5|A|1301
7ZPQ|1|5|A|1302
7ZPQ|1|5|A|1303
7ZPQ|1|5|A|1304
7ZPQ|1|5|U|1305
7ZPQ|1|5|G|1306
7ZPQ|1|5|G|1307
7ZPQ|1|5|A|1308
7ZPQ|1|5|U|1309
7ZPQ|1|5|G|1310
7ZPQ|1|5|G|1311
7ZPQ|1|5|C|1312
7ZPQ|1|5|G|1313
7ZPQ|1|5|C|1314
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 4
- 5S ribosomal RNA; 5S rRNA
- Chain BB
- 60S ribosomal protein L3
- Chain BF
- 60S ribosomal protein L7-A
- Chain BI
- RPL10 isoform 1
- Chain BN
- 60S ribosomal protein L16-A
- Chain Be
- 60S ribosomal protein L33-A
- Chain Bl
- 60S ribosomal protein L40-A
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