IL_7ZPQ_175

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

UUAUCA*UCUUAUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZPQ_175 not in the Motif Atlas

Homologous match to IL_5TBW_072

Geometric discrepancy: 0.091

The information below is about IL_5TBW_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_39753.2

Basepair signature

cWW-L-R-tWH-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

7ZPQ|1|5|U|1702
7ZPQ|1|5|U|1703
7ZPQ|1|5|A|1704
7ZPQ|1|5|U|1705
7ZPQ|1|5|C|1706
7ZPQ|1|5|A|1707
*
7ZPQ|1|5|U|1737
7ZPQ|1|5|C|1738
7ZPQ|1|5|U|1739
7ZPQ|1|5|U|1740
7ZPQ|1|5|A|1741
7ZPQ|1|5|U|1742
7ZPQ|1|5|G|1743

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain Bf

60S ribosomal protein L34-A